Well thanks to a comment on an old post. I'm now using Crutons as my bookmark manager. So far I like what I see. I have tried a lot of them and this one meets my needs the best out of all of them (If you look at the comments of the old post there were a lot of recommendations and I looked at everyone). It doesn't have very much documentation but it is pretty simple to use but I would still like a to see a little more documentation. As for features it has most of the features that I was looking for, including rearranging nodes via drag and drop, support for Firebird and IE sidebars, and a search feature.
Most of the other ones I have tried out I haven't, used more than a day so lets see how this one fairs. I have a good feeling that I'm going to stick with it. If you are in the market for a online bookmark manager give it a look, best of all its free :)
EDIT: After some more investigation I realized that the Cruton product is just a wrapper around the Sitebar Project (an Open Source Project). Which turns out to be good for me, becuase I wanted to customize and host this myself. So I have downloaded it and I'm playing with the source now.