My New Favorite Tool
I needed to do a SQL Diff today <coughing>Yukon team pay attention</coughing> and I came across a great program called Beyond Compare. It lets me load up 2 files side-by-side, and shows me where there are differences. It let me compare the outputs of SQLEM-generated scripts, and see where changes were made. It was a HUGE help. It is not without problems though. Line editing is clumsy (you can only edit one line at a time, and you can't edit the file directly) however they do make it easy to copy text between the files. All in all, it's a great product, and well worth the $30.
I understand the program also works with directories and non-text files. It's a must-have for any web application developer. They just released a new version today, so go check it out. Hopefully they'll update it to managed code soon (web service anyone?) ;).